ࡱ> PRO[ R$bjbj0&ΐΐ 8+GkN(ccccc MMMMMMM$Q5TRM9 Mcc4%Ni$i$i$ ccMi$ Mi$i$JDrMcYz)#RK&M;N0kNxKT#vTLrMrMTM,i$ MMi$ kN T  : CURRICULUM VITAE Yufeng Wu Personal Information: Address: Department of Horticulture, University of Wisconsin-Madison 1575 Linden Drive, Madison, WI, 53706, USA Phone: (01) 608-609-2340 E-mail: ywu38@wisc.edu Education: 2001 B. S., Agronomy, Henan Agricultural University, Zhengzhoum China 2004 M. S., Genetics, China Agricultural University, Beijing, China Advisor: Dr. Dengyun Zhu 2008 Ph. D., Genetics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China Advisor: Dr. Mingsheng Chen Professional Positions: 2008-12 Research Associate, Department of Horticulture, University of Wisconsin-Madison. 2012- Assistant Scientist, Department of Horticulture, University of Wisconsin-Madison. Scholarships & Honors: 2005 Scholarship for Postgraduate of Chinese Academy of Sciences 2006 Trip-A Student Award of Postgraduate College, Chinese Academy of Science Research Experience: 2001-04 Plant genetics Using co-transformation method to obtain marker-free Lysine-rich transgenic maize 2004-08 Bioinformatics and Comparative Genomics Using genomic data and microarray to study the evolution of duplicated genes formed by whole genome duplication in rice Primary genetic mapping of shattering gene in rice 2008- Bioinformatics and Epigenomics in Plants Characterization of histone modifications in rice centromere using ChIP-chip Genome-wide characterization of open chromatin signatures, histone modifications and gene expression in plants using DNase-seq, ChIP-seq and RNA-seq Genome-wide characterization of DNA methylation in plants using ChIP-seq and BS-seq Genome-wide characterization nucleosome positioning in plants using MNase-seq Characterization of centromere and neo-centromere in plants using ChIP-seq Visualized and web-based presentation of genome and epigenome data Publications: Wu, Y., Zhu, Z., Ma, L., and Chen, M. (2008) The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution. Molecular Biology and Evolution 25: 1003-1006. Hirsch, C.D., Wu, Y., Yan, H., and Jiang, J. (2009) Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species. Molecular Biology and Evolution 26: 2877-2885. Yan, H., Kikuchi, S., Neumann, P., Zhang, W., Wu, Y., Chen, F., and Jiang, J. (2010) Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice. Plant Journal 63: 353-365. Wu, Y., Kikuchi, S., Yan, H., Zhang, W., Rosenbaum, H., Iniguez, A.L., and Jiang, J. (2011) Euchromatic subdomains in rice centromeres are associated with genes and transcription. Plant Cell 23: 4054-4064. Zhang, W.*, Wu, Y*., Schnable, J.C., Zeng, Z., Freeling, M., Crawford, G.E., and Jiang, J. (2012) High-resolution mapping of open chromatin in the rice genome. Genome Research 22:151-162. (*Co-first authors) Zhang, W.*, Zhang, T.*, Wu, Y.*, and Jiang, J. (2012) Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis. Plant Cell 24: 2719-2731. (*Co-first authors) Gong, Z., Wu, Y., Kobl~kov, A., Torres, G.A., Wang, K., Iovene, M., Neumann, P., Zhang, W., Novk, P., Buell, C.R., Macas, J., and Jiang, J. (2012) Repeatless and repeat-based centromeres in potato: Implications for centromere evolution. Plant Cell 24: 3559-3574. Duangpan, S., Zhang, W.L., Wu, Y., Jansky, S.H., and Jiang, J. (2013) Insertional mutagenesis using Tnt1 retrotransposon in potato. Plant Physiology (in press) Wang, K.*, Wu, Y.*, Zhang, W., Dawe R., and Jiang, J. (2013) Centromere adaptation after an interspecies cross. Genome Research (pending on a minor revision). (*Co-first authors) Wu, Y., Zhang, W., and Jiang, J. (2013) 012; ; X   + - . 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